Tag Archives: pest management

On Conservation Complexities

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It is too often the case that biodiversity problems are managed by single species solutions. If you have too many deer in your parks or conservation areas, start a culling program. If your salmon fishing stocks are declining, cull seals and sea lions. The overall issue confounding these kinds of ‘solutions’ are now being recognized as a failure to appreciate the food web of the community and ecosystem in which the problem is embedded. Much of conservation action is directed at heading back to the “good old days” without very much data about what the ecosystem was like in the “good old days”.

Problems with introduced species top the list of conservation dilemmas, and nowhere are these problems more clearly illustrated than by the conservation dilemmas of New Zealand and Australia. If we concentrate our management efforts on introduced predators or herbivores, we face a large set of conservation issues, well-illustrated by the current New Zealand situation (Leathwick and Byrom 2023, Parkes and Murphy 2003).

New Zealand is a particularly strong case history because we have a good knowledge of its indigenous biodiversity from the time that people colonized these islands, as well as reasonable information about how things have changed since Europeans colonized the country (Thomson 1922). It is in some respects the classic case of biodiversity impacts from introduced species. The introduced species list is large and I can talk only about part of these species introduced mostly in the late 1800s. Seven species of deer were released in New Zealand, along with chamois, hares, rabbits, cats, hedgehogs, three mustelid species, brushtail possums, rats, house mice, along with all the usual farm animals like cattle, horses, and dogs (King & Forsyth 2021). The first concerns began about 100 years ago over ungulate browsing in forests and grasslands. Deer control began about 1930, and over 3 million deer were shot between 1932 and 1954. Caughley (1983) showed that this amount of control did not reduce the impact of browsing and grazing by ungulates in native ecosystems. Control and harvesting efforts decreased in recent years partly from a lack of government funding with the result that deer numbers have rebounded. The recognition of the impact of other pests like rabbits, weasels, and rats led to a focus on poison campaigns. Brushtail possum control with poisons was started to reduce tree browsing damage by the 1970s and gradually increased to reduce TB transmission to domestic livestock by the 1990s. Large scale predator control began in the late 1990s with a focus on rats, stoats (weasels, Mustela erminea), and possums with good success in preventing declines in threatened bird species. All this history is covered in detail in Leathwick and Byrom (2023).

These efforts led to a declaration in 2016 of “Predator Free New Zealand 2050” (PF2050) a compelling promise that would alleviate biodiversity problems by making New Zealand free of possums, mustelids, and rats by 2050, and predator control has thus became the focus of recent conservation action. The 2050 part of the promise was always a worry, since governments in general promise much in advances by that year, but the optimistic view is that predator control will achieve this objective if careful planning is made, adequate funding is available (c.f. Department of Conservation 2021), and well-articulated guidelines for eradication of invasive species are followed (Bomford & O’Brien 1995). The message is that biodiversity goals can be achieved if we move from single species management to a stable system of ecosystem management in the broad sense, including strong research, good public participation and support toward these goals, and that biodiversity conservation will be greatly boosted by thorough consultation with (if not leadership by) the indigenous groups involved.

The New Zealand specific situation cannot be applied directly to all biodiversity concerns, but the New Zealand conservation story and the 12 recommendations given in Leathwick and Byrom (2023) show the necessity of goal definition and coordination between the public, government, and private foundations if we are to maximize the effectiveness of our approach to the biodiversity crisis. Not every conservation issue involves introduced species, but the principle must be: What do we want to achieve, and how are we going to get there?

Bomford, M, & O’Brien, P 1995. Eradication or control for vertebrate pests? Wildlife Society Bulletin 23, 249–255.

Caughley, G. (1983) The Deer Wars: The Story of Deer in New Zealand. Heinemann, Auckland. ISBN: 0868633895.

Department of Conservation (2020). Annual Report. Available at: https://www.doc.govt. nz/nature/pests-and-threats/predator-free-2050/goal-tactics-and-new-technology/tools-to-market/.    See also: PF2050-Limited-Annual-Report-2022.pdf

King, C.M. & Forsyth, D.M. (2021). eds. The Handbook of New Zealand Mammals. 3rd edition. CSIRO Publishing, Canberra. ISBN 978-1988592589.

Leathwick, J.R. & Byrom, A.E. (2023) The rise and rise of predator control: a panacea, or a distraction from conservation goals? New Zealand Journal of Ecology, 47, 3515. doi: 10.20417/nzjecol.47.3515.

Parkes, J. & Murphy, E. (2003) Management of introduced mammals in New Zealand. New Zealand Journal of Zoology, 30, 335-359. doi:10.1080/03014223.2003.9518346.

Thomson, G.M. (1922) The Naturalisation of Animals and Plants in New Zealand. The University Press, Cambridge, England. doi: 10.5962/bhl.title.28093.

Management by Killing

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While reading a recent wildlife management magazine I became focused on the idea that the main topic of interest was killing in the same way that the news every day is now about who killed who yesterday. The management paradigm behind my concerns is this simple one:

  1. Decide who are the “good guys” and who are the “bad guys”.
  2. Kill all (or many) of the “bad guys”.

I know this sounds too simple but bear with me. In the papers this week are two current management issues. In Sweden they have decided they need only 400 wolves in the entire country, and they have several hundred too many, so they armed many hunters with very large guns to go out and kill every wolf they can find, using dogs and other tricks, until they reach the magic number of 400 left. In British Columbia there is concern that predators like sea lions and seals eat Pacific salmon so there are fewer salmon for the fishers to catch and sell. The answer again leaps to mind – kill the sea lions and seals and anything else that eats salmon, Fisheries Science 101.

If this approximates ‘management’, our main discussions must be to decide who are the “good guys”. This leads to conflicts with conservation at times, so we must develop a “killing for conservation” subroutine (Shutt and Lees 2021) which raises the cumbersome question of whether our conservation efforts are causing harm to other species.

One way to challenge the Management by Killing paradigm is to start with a food web of the species involved – what might be the consequences of taking one species out of a food web on any or all the other species in the web? Now the management problem expands because we must do good community ecology to answer these questions. Some of the simple food web consequences have already been well described. Study the coyotes in the grasslands and you will find out how complex its diet is (Lingle et al. 2022), so that killing coyotes will affect other species and you may get many more prairie dogs or ground squirrels, some of which may carry the plague bacterium and many of which predate on ground nesting birds. Or if you are a fan of penguins in Antarctica you will find that killer whales eat penguins (Pitman and Durban 2010) so do we kill killer whales to save penguins? King penguins are declining on Macquarie Island for reasons that are not clear, and predation by a suite of avian birds of prey is one possible component (Pascoe et al. 2022). Yet we are reluctant to kill bird predators. Barred owls kill the endangered spotted owl in western North America, so should we be killing barred owls in areas of overlap (Bodine and Capaldi 2017, Wiens et al. 2021)? So even if you have available detailed natural history information on a predator, you cannot easily estimate the effect of removing it without field experimentation.  

My main points are two. First, if you are able, educate your favourite newscaster about the complexities of the Management by Killing approach to conservation. Second, support more detailed research on food web dynamics to show that ecosystems cannot be managed by the two simple rules listed above.

It does not escape me that all this discussion could be applied to the human species, but I venture far out of my field of competence to address this political and social issue (Ein et al. 2022).

Bodine, E.N. & Capaldi, A. (2017) Can culling Barred Owls save a declining Northern Spotted Owl population? Natural Resource Modeling, 30, e12131.doi. 10.1111/nrm.12131.

Ein, N., Liu, J.J.W. Houle, S. Easterbrook, B. et al. (2022) The effects of child encounters during military deployments on the well-being of military personnel: a systematic review. European Journal of Psychotraumatology, 13(2): 2132598. doi. 10.1080/20008066.2022.2132598.

Lingle, S., Breiter, C.J., Schowalter, D.B. & Wilmshurst, J.F. (2022) Prairie dogs, cattle subsidies and alternative prey: seasonal and spatial variation in coyote diet in a temperate grassland. Wildlife Biology, 2022: 5.1doi. 10.1002/wlb3.01048.

Pascoe, P., Raymond, B. & McInnes, J. (2022) The current trajectory of king penguin (Aptenodytes patagonicus ) chick numbers on Macquarie Island in relation to environmental conditions. ICES Journal of Marine Science, 79, 2084-2092.doi.

Pitman, R.L. & Durban, J.W. (2010) Killer whale predation on penguins in Antarctica. Polar Biology, 33, 1589-1594.doi. 10.1007/s00300-010-0853-5.

Shutt, J.D. & Lees, A.C. (2021) Killing with kindness: Does widespread generalised provisioning of wildlife help or hinder biodiversity conservation efforts? Biological Conservation, 261, 109295.doi: 10.1016/j.biocon.2021.109295.

Wiens, J.D., Dugger, K.M., Higley, J.M., Lesmeister, D.B., Franklin, A.B., et al. (2021) Invader removal triggers competitive release in a threatened avian predator. Proceedings of the National Academy of Sciences, 118 (31), e2102859118.doi. 10.1073/pnas.2102859118.

On Cats and Birds and Policy Gaps

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Many people in western societies like to keep cats as pets, and with that simple observation we run into two problems that require resolution. First, cats are killers of wildlife, particularly birds but also an array of other small prey. Most people do not believe this, because cats are adored and make good, if somewhat disinterested pets. So, my first point might be that if you think cats are not killers, I invite you to keep another cat like a mountain lion for a pet. But we need some data on the kill rate of cats. Before we begin this search, we should note that cats can be kept inside dwellings or in cat runs with no access to birds or other prey. If this is the case, no problem exists for wildlife, and you can skip to the bottom of this blog for one other issue to recognize.

How much mortality can be traced to cats roaming out of doors? This will include normal house cats let out to roam at night, as well as wild cats that have been discarded by their owners into the wild. There is extensive literature on cats killing birds. If you want a brief introduction Greenwall et al. (2019) discuss a nesting colony of Fairy Terns, a threatened species of Australian seabird, along a beach in southwestern Australia. With detailed observations and photographic data, they recorded the complete failure of all 111 nests in this colony with the loss of all tern chicks in the early summer of 2018. The predator was a single desexed feral cat. Many local governments allow the capture of feral cats with the protocol that they are desexed and then released back into the environment. Clearly desexing and release does not remove the problem.

The domestic cat has been spread world-wide, so that the cat problem is not a local one. Li et al. (2021) completed a survey of feral cat kill rates in the eastern part of China and found that the minimum annual loss of wildlife to feral cats was in the range of 2.7-5.5 billion birds, and 3.6-9.8 billion mammals, as well as large numbers of amphibians, reptiles, and fish. In gardens in Western Europe cat predation on ringed birds studied with precise data showed that up to 25% of dead birds were killed by cats, but these data varied greatly among species (Pavisse et al. 2019). For the European Robin which often feeds on the ground 40% of all ringed birds were killed by cats, for the European Greenfinch the figure was 56% of ringed birds killed. These are just two examples of an extensive literature on cat kills going back many years (Calvert et al. 2013).

What can we do about this predation? As with too many conservation issues the answer is simple but difficult to implement: Ban all cats from free-ranging unless they are on a leash and under control. Keep cats in the house or in special cat runs that are confined outdoors. Ban completely stupid programs of catching feral cats, sterilizing them, and releasing them back to the wild to continue their killing. Cats may make marvellous pets but need to be kept indoors. Many people would support these measures but many cat owners would disagree about such measures. Some progress is being made in urban environments in which some suburbs do not permit cats to roam freely.

Feral cats are a serious issue in Australia because they attack many threatened birds and reptiles (Doherty et al. 2019). In this case a federal environmental policy to kill 2 million cats is popular but from a conservation viewpoint still a poor policy. We do not know if killing 2 million cats is too much or too few, and without specific goals for conservation and careful monitoring of bird populations widespread killing my not achieve the goal of protection for threatened species. Eradications of cats on islands is often feasible, but no mainland eradication is currently possible.

As conservation biologists know too well, when humans are the problem, wise policies may not be implemented. So, the second issue and the bottom line might be to consider the human costs of cat ownership. Adhikari et al. (2020) report a highly significant association between the risk of dying from colon cancer and cat ownership. These results are not confounded by sedentary lifestyle, cigarette smoking or socio-economic status. In a similar study Adhikari et al. (2019) found that living with a cat significantly increased the death rate from lung cancer among women. The cause of these associations cannot yet be deciphered but are postulated to result from mycotoxins, toxic secondary metabolites produced by fungi (moulds) in cereal crops used in cat food. Aflatoxin is a mycotoxin that produces well-known chemicals that are seriously toxic to animals and humans.

These kinds of studies of associations arising from surveys can be tossed off by the typical comments ‘these-things-do-not-concern-my cats’ or ‘that there is no proof of the exact cause’ so if you are concerned you might investigate the literature on both mycotoxins and the diseases that cats carry.

It is up to humans to solve human problems, but up to conservation biologists to point out the detrimental effects of household pets and their feral cousins on wildlife. The present situation is a complete policy failure by governments at all levels. Good science is relatively easy, good policy is very difficult.

Adhikari, Atin, Adhikari, A., Jacob, N. K., and Zhang, J. (2019). Pet ownership and the risk of dying from lung cancer, findings from an 18 year follow-up of a US national cohort. Environmental Research 173, 379-386. doi: 10.1016/j.envres.2019.01.037.

Adhikari, Atin, Adhikari, A., Wei, Y. D., and Zhang, J. (2020). Association between pet ownership and the risk of dying from colorectal cancer: an 18-year follow-up of a national cohort. Journal of Public Health 28, 555-562. doi: 10.1007/s10389-019-01069-1.

Calvert, A.M., Bishop, C.A., Elliot, R.D., Krebs, E.A., Kydd, T.M., Machtans, C.S., Robertson, G.J., 2013. A synthesis of human-related avian mortality in Canada. Avian Conservation and Ecology 8: 11. doi 10.5751/ACE-00581-080211.

Doherty, T.S., Driscoll, D.A., Nimmo, D.G., Ritchie, E.G., and Spencer, R. (2019). Conservation or politics? Australia’s target to kill 2 million cats. Conservation Letters 12, e12633. doi: 10.1111/conl.12633.

Li, Yuhang, Wan, Yue, Shen, Hua, Loss, S.R., Marra, P.P., and Li, Zhongqiu (2021). Estimates of wildlife killed by free-ranging cats in China. Biological Conservation 253, 108929. doi: 10.1016/j.biocon.2020.108929.

Greenwell, C.N., Calver, M.C., and Loneragan, N.R. (2019). Cat Gets Its Tern: A Case Study of Predation on a Threatened Coastal Seabird. Animals 9, 445. doi: 10.3390/ani9070445.

Pavisse, R., Vangeluwe, D., and Clergeau, P. (2019). Domestic Cat Predation on Garden Birds: An Analysis from European Ringing Programmes. Ardea 107, 103-109. doi: 10.5253/arde.v107i1.a6.

A Poem on the State of Agriculture in 1935

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After listening to me rant about the state of modern agriculture in the Anthropocene, a colleague in Australia sent me this poem by C.J. Dennis (1876 – 1938) written long before most of us were born. I reprint it here as a reminder that many of our ecological problems are not new, that we have perhaps made progress on some but that in many areas Dennis’s poem about agriculture could have been published today. A powerful poem that in a classroom discussion might lead us to second thoughts that we now live in the best of all possible worlds. Vale C.J. Dennis.

C.J. Dennis in the Herald in 1935 in Australia
THE SPOILERS

“Because overstocking and continuous grazing have denuded the land of vegetation and removed all resistance to wind and flood, it has now been suddenly realised that erosion in the Western districts of N.S.W. has reduced thousands of acres to little better than desert. A descendant of the original black inhabitants of this country might regard this as just retribution.

Ye are the Great White People, masters and lords of the earth,
Spreading your stern dominion over the world’s wide girth.
Here, where my fathers hunted since Time’s primordial morn,
To our land’s sweet, fecund places, you came with your kine and corn.
Mouthing your creed of Culture to cover a baser creed,
Your talk was of White Man’s magic, but your secret god was Greed.
And now that your generations to the second, the third have run,
White Man, what of my country?  Answer, what have you done?

Now the God of my Simple People was a simple, kindly God,
Meting his treasure wisely that sprang from this generous sod,
With never a beast too many and never a beast too few,
Thro’ the lean years and the fruitful, he held the balance true.
Then the White Lords came in their glory; and their cry was: “More!  Yet more!”
And to make them rich for a season they filched Earth’s age-old store,
And they hunted my Simple People — hunters of yester-year —
And they drove us into the desert — while they wrought fresh deserts here.

They ravaged the verdant uplands and spoiled wealth ages old,
Laid waste with their pumps and sluices for a gunny-bag of gold;
They raided the primal forests and the kind, rain-bringing trees
That poured wealth over the lowlands thro’ countless centuries;
They fed their kine on the grasslands, crowding them over the land,
Till blade and root in the lean years gave place to hungry sand.
Then, warned too late of their folly, the White Lords grew afraid,
And they cried to their great god Science; but Science could not aid.

This have you done to our country, lords of the air and the seas,
This to the hoarded riches of countless centuries —
Life-yielding loam, uncovered, unsheltered in the drought,
In the floods your hand unbridled, to the age-old sea drifts out.
You have sold man’s one true birthright for a White Man’s holiday,
And the smothering sands drift over where once green fields turn grey —
Filched by the White Man’s folly to pamper the White Lords’ vice;
And leave to your sons a desert where you found a paradise.”

Herald, 6 December 1935, page 6

http://www.middlemiss.org/lit/authors/denniscj/newspapers/herald/1935/works/spoilers.html

On Culling Overabundant Wildlife

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Ecologists have written much about the culling of wildlife from an ecological and conservation perspective (Caughley 1981, Jewell et al. 1981, Bradford and Hobbs 2008, Hampton and Forsyth 2016). The recommendations for culling as a method for reducing overabundant wildlife populations are typically scientifically well established and sensitive to animal welfare. The populations chosen for culling are classified as ‘overabundant’. But overabundant is a human-defined concept, and thus requires some form of social license to agree about what species, in which conditions, should be classified as ‘overabundant’. The problem of overabundance usually arises when humans make changes that permit a species to become so numerous locally that it is having an adverse effect on its food supply, its competitors, or the integrity of the ecosystem it occupies. Once overabundance is recognized, the management issue is to determine which methods should be used to reduce abundance to a suitable level. Culling is only one option for removing wildlife, and animals may be captured and moved elsewhere if that is possible or sterilized to prevent reproduction and further increase (Liu et al. 2012, Massei and Cowan 2014).

All these policy issues are subject to open public debate and these debates are often heated because of different belief systems. Animal rights advocates may push the assumption that we humans have no rights to kill any wildlife at all. News media often concentrate on the most stringent views on controlling populations that are overabundant, and public discussion becomes impossible. Two aspects need to be noted that are often lost in any discussion. First is the cost of alternatives in dollars and cents. As an example, most ecologists would agree that wild horses are overabundant on open range in western United States (Davies et al. 2014, Rutberg et al. 2017) but the question is what to do about this. Costs to reduce horse populations by capturing horses and penning them and feeding them are astronomical (the current situation in western USA, estimated at $25,000 per animal) but this method of control could be done if society wishes to spend money to achieve this goal. Culling would be much cheaper, but the killing of large animals is anathema to many people who speak loudly to politicians. Fertility control methods are improving with time and may be more acceptable socially, but costs are high and results in population reduction can be slow in coming (Hobbs and Hinds 2018). Models are essential to sort out many of these issues, whether it be the projected costs of various options (including doing nothing), the expected population trajectory, or the consequences for other species in the ecosystem.

The bottom line is that if overabundant wildlife populations are not reduced by some means, the result must be death by starvation or disease coupled with extensive damage to other species in these ecosystems. This type of “Plan B” is the second aspect not often considered in discussions of policies on overabundant species. In the present political scene in North America opposition to culling overabundant wildlife is strong, coherent discussion is rarely possible, and Plan B problems are rarely heard. Most overabundant wildlife result from human actions in changing the vegetation, introducing new species, and reducing and fragmenting wildlife habitats. Wishing the problems will go away without doing anything is not a feasible course of action.

These kinds of problems in wildlife management are soluble in an objective manner with careful planning of research and management actions (Hone et al. 2017). Ecologists have a moral duty to present all scientific sides of the management of overabundant species, and to bring evidence into the resulting social and political discussions of management issues. It is not an easy job.

Bradford, J.B., and N.T. Hobbs. 2008. Regulating overabundant ungulate populations: An example for elk in Rocky Mountain National Park, Colorado. Journal of Environmental Management 86:520-528. doi: 10.1016/j.jenvman.2006.12.005

Caughley, G. 1981. Overpopulation. Pages 7-19 in P.A. Jewell S. Holt, and D. Hart, editors. Problems in Management of Locally Abundant Wild Mammals. Academic Press, New York. ISBN: 978-0-12-385280-9

Davies, K. W., Collins, G. & Boyd, C. S. (2014) Effects of feral free-roaming horses on semi-arid rangeland ecosystems: an example from the sagebrush steppe. Ecosphere, 5, 127. doi: 10.1890/ES14-00171.1

Hampton, J. O., and D. M. Forsyth. 2016. An assessment of animal welfare for the culling of peri-urban kangaroos. Wildlife Research 43:261-266. doi: 10.1071/WR16023

Hobbs, R.J. and Hinds, L.A. (2018). Could current fertility control methods be effective for landscape-scale management of populations of wild horses (Equus caballus) in Australia? Wildlife Research 45, 195-207. doi: 10.1071/WR17136.

Hone, J., Drake, V.A. & Krebs, C.J. (2017) The effort–outcomes relationship in applied ecology: Evaluation and implications BioScience, 67, 845-852. doi: 10.1093/biosci/bix091

Jewell, P. A., Holt, S. & Hart, D. (1982) Problems in Management of Locally Abundant Wild Mammals. Academic Press, New York. 360 pp. ISBN: 978-0-12-385280-9

Liu, M., Qu, J., Yang, M., Wang, Z., Wang, Y., Zhang, Y. & Zhang, Z. (2012) Effects of quinestrol and levonorgestrel on populations of plateau pikas, Ochotona curzoniae, in the Qinghai-Tibetan Plateau. Pest Management Science, 68, 592-601. doi: 10.1002/ps.2302

Massei, G. & Cowan, D. (2014) Fertility control to mitigate human–wildlife conflicts: a review. Wildlife Research, 41, 1-21. doi: 10.1071/WR13141

Rutberg, A., Grams, K., Turner, J.W. & Hopkins, H. (2017) Contraceptive efficacy of priming and boosting doses of controlled-release PZP in wild horses. Wildlife Research, 44, 174-181. doi: 10.1071/WR16123

Predator Free New Zealand

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The New Zealand Government announced in July 2016 the adoption of Predator Free New Zealand 2050, a program for the control and eradication of introduced pests. It is setting up a new public-private partnership company by the beginning of 2017 to help fund regional large-scale predator eradication programs with the anticipated funding ratio of 1 government dollar to 2 private dollars. This is a bold new program grounded in the fundamental research of an excellent array of conservation biologists that have carried out the field research underpinning what needs to be done to protect native biodiversity in New Zealand.

Because of its isolation and the complete absence of endemic terrestrial vertebrate predators, New Zealand has become a basket case for the conservation of native species after the introduction of four species of rodents – Norway rat, black rat, house mouse, and Pacific rat (kiore) – as well as the possum (introduced for fur), the stoat (to “control rodents”) and the hedgehog (Goldson et al. 2015). The initial focus in this program will be on rats, stoats, and possums. Rat control on islands has already been a major success story for New Zealand scientists (Russell et al. 2016).

Four short-term goals have been set for 2025 for the Predator Free New Zealand project:

  • An additional 1 million hectares of land where pests have been supressed or removed through Predator Free New Zealand partnerships
  • Development of a scientific breakthrough capable of removing at least one small mammal predator from New Zealand entirely
  • Demonstration areas of more than 20,000 hectares that are predator free without the use of fences
  • Complete removal of all introduced predators from offshore island nature reserves

This is a striking vision, and it puts New Zealand at the forefront of global conservation efforts and goals. Everyone appreciates that it will not be easy. In particular there has to be careful attention to the order in which pests are removed. Competition between invasive species as well as predation among them often has counterintuitive results. In New Zealand when rats were removed from experimental plots, house mice increased, and when possums were removed rats increased (Ruscoe et al. 2011). When stoats (Mustela erminea) were removed, there was no effect on rat or mouse abundance, contrary to what a model predicted (Tompkins and Veltman 2006). At the moment there is no clear way to do a total removal of these pest mammals all at once rather than sequentially.

One of the major stimuli for this program has been stopping bovine TB transmission from possums to cattle. The brushtail possum (introduced from Australia) is a disease reservoir and vector of bovine tuberculosis to cattle. Extensive control programs for possums are applied over about 10 million ha in New Zealand by the spreading of 1080 poison baits and trapping, and this program has reduced possum populations to low numbers but not eliminated this pest (Byrom et al. 2016). Poisoning for possum control also reduces stoats and rats, and so has secondary benefits for native biodiversity. A total of approximately NZ$55 million is spent each year on this control program, and if possums could be eradicated, the financial benefits would be great for the cattle industry. Byrom et al. (2016) showed that possum reduction by poisoning had benefits not only for TB transmission but also for increases in vegetation (reduced herbivory), invertebrate, frog and bird abundance.

Two worries are that the social license to continue widespread use of deadly poisons will erode in the future and secondly that the pest species will eventually evolve resistance to the poisons. For these reasons much research is needed on more clever ways of achieving pest reduction and elimination.

The success of island eradications in the past 20 years has emboldened ecologists to wish for successes on larger and larger scales. But eradication is a complex problem and there is a long history of success and failures, particularly in insect populations (Myers et al. 2000). But by reaching out with a direct challenge to applied ecologists, molecular biologists, chemists, and other clever scientists, New Zealand has moved the standard forward in ways that bode well for understanding more why ecology matters.

And then it is on to the feral cats.

Byrom, A.E., Innes, J. & Binny, R.N. (2016) A review of biodiversity outcomes from possum-focused pest control in New Zealand. Wildlife Research, 43, 228-253. doi: 10.1071/WR15132

Campbell, K.J., et al. (2015) The next generation of rodent eradications: Innovative technologies and tools to improve species specificity and increase their feasibility on islands. Biological Conservation, 185, 47-58. doi: 10.1016/j.biocon.2014.10.016

Goldson, S.L., et al. (2015) New Zealand pest management: current and future challenges. Journal of the Royal Society of New Zealand, 45, 31-58. doi: 10.1080/03036758.2014.1000343

Myers, J.H., Simberloff, D., Kuris, A.M. & Carey, J.R. (2000) Eradication revisited: dealing with exotic species. Trends in Ecology and Evolution, 15, 316-320.

Ruscoe, W.A. et al. (2011) Unexpected consequences of control: competitive vs. predator release in a four-species assemblage of invasive mammals. Ecology Letters, 14, 1035-1042. doi: 10.1111/j.1461-0248.2011.01673.x

Russell, J.C. & Broome, K.G. (2016) Fifty years of rodent eradications in New Zealand: another decade of advances. New Zealand Journal of Ecology, 40, 197-204. doi: 10.20417/nzjecol.40.22.

Tompkins, D.M. & Veltman, C.J. (2006) Unexpected consequences of vertebrate pest control: predictions from a four-species community model. Ecological Applications, 16, 1050-1061. doi: 10.1890/1051-0761(2006)016[1050:UCOVPC]2.0.CO;2

 

Hypothesis testing using field data and experiments is definitely NOT a waste of time

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At the ESA meeting in 2014 Greg Dwyer (University of Chicago) gave a talk titled “Trying to understand ecological data without mechanistic models is a waste of time.” This theme has recently been reiterated on Dynamic Ecology Jeremy Fox, Brian McGill and Megan Duffy’s blog (25 January 2016 https://dynamicecology.wordpress.com/2016/01/25/trying-to-understand-ecological-data-without-mechanistic-models-is-a-waste-of-time/).  Some immediate responses to this blog have been such things as “What is a mechanistic model?” “What about the use of inappropriate statistics to fit mechanistic models,” and “prediction vs. description from mechanistic models”.  All of these are relevant and interesting issues in interpreting the value of mechanistic models.

The biggest fallacy however in this blog post or at least the title of the blog post is the implication that field ecological data are collected in a vacuum.  Hypotheses are models, conceptual models, and it is only in the absence of hypotheses that trying to understand ecological data is a “waste of time”. Research proposals that fund field work demand testable hypotheses, and testing hypotheses advances science. Research using mechanistic models should also develop testable hypotheses, but mechanistic models are certainly are not the only route to hypothesis creation of testing.

Unfortunately, mechanistic models rarely identify how the robustness and generality of the model output could be tested from ecological data and often fail comprehensively to properly describe the many assumptions made in constructing the model. In fact, they are often presented as complete descriptions of the ecological relationships in question, and methods for model validation are not discussed. Sometimes modelling papers include blatantly unrealistic functions to simplify ecological processes, without exploring the sensitivity of results to the functions.

I can refer to my own area of research expertise, population cycles for an example here.  It is not enough for example to have a pattern of ups and downs with a 10-year periodicity to claim that the model is an acceptable representation of cyclic population dynamics of for example a forest lepidopteran or snowshoe hares. There are many ways to get cyclic dynamics in modeled systems. Scientific progress and understanding can only be made if the outcome of conceptual, mechanistic or statistical models define the hypotheses that could be tested and the experiments that could be conducted to support the acceptance, rejection or modification of the model and thus to inform understanding of natural systems.

How helpful are mechanistic models – the gypsy moth story

Given the implication of Dwyer’s blog post (or at least blog post title) that mechanistic models are the only way to ecological understanding, it is useful to look at models of gypsy moth dynamics, one of Greg’s areas of modeling expertise, with the view toward evaluating whether model assumptions are compatible with real-world data Dwyer et al.  2004  (http://www.nature.com/nature/journal/v430/n6997/abs/nature02569.html)

Although there has been considerable excellent work on gypsy moth over the years, long-term population data are lacking.  Population dynamics therefore are estimated by annual estimates of defoliation carried out by the US Forest Service in New England starting in 1924. These data show periods of non-cyclicity, two ten-year cycles (peaks in 1981 and 1991 that are used by Dwyer for comparison to modeled dynamics for a number of his mechanistic models) and harmonic 4-5 year cycles between 1943 and1979 and since the 1991 outbreak. Based on these data 10-year cycles are the exception not the rule for introduced populations of gypsy moth. Point 1. Many of the Dwyer mechanistic models were tested using the two outbreak periods and ignored over 20 years of subsequent defoliation data lacking 10-year cycles. Thus his results are limited in their generality.

As a further example a recent paper, Elderd et al. (2013)  (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3773759/) explored the relationship between alternating long and short cycles of gypsy moth in oak dominated forests by speculating that inducible tannins in oaks modifies the interactions between gypsy moth larvae and viral infection. Although previous field experiments (D’Amico et al. 1998) http://onlinelibrary.wiley.com/doi/10.1890/0012-9658(1998)079%5b1104:FDDNAW%5d2.0.CO%3b2/abstract concluded that gypsy moth defoliation does not affect tannin levels sufficiently to influence viral infection, Elderd et al. (2013) proposed that induced tannins in red oak foliage reduces variation in viral infection levels and promotes shorter cycles. In this study, an experiment was conducted using jasmonic acid sprays to induce oak foliage. Point 2 This mechanistic model is based on experiments using artificially induced tannins as a mimic of insect damage inducing plant defenses. However, earlier fieldwork showed that foliage damage does not influence virus transmission and thus does not support the relevance of this mechanism.

In this model Elderd et al. (2013) use a linear relationship for viral transmission (transmission of infection on baculovirus density) based on two data points and the 0 intercept. In past mechanistic models and in a number of other systems the relationship between viral transmission and host density is nonlinear (D’Amico et al. 2005, http://onlinelibrary.wiley.com/doi/10.1111/j.0307-6946.2005.00697.x/abstract;jsessionid=D93D281ACD3F94AA86185EFF95AC5119.f02t02?userIsAuthenticated=false&deniedAccessCustomisedMessage= Fenton et al. 2002, http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2656.2002.00656.x/full). Point 3. Data are insufficient to accurately describe the viral transmission relationship used in the model.

Finally the Elderd et al. (2013) model considers two types of gypsy moth habitat – one composed of 43% oaks that are inducible and the other of 15% oaks and the remainder of the forest composition is in adjacent blocks of non-inducible pines. Data show that gypsy moth outbreaks are limited to areas with high frequencies of oaks. In mixed forests, pines are only fed on by later instars of moth larvae when oaks are defoliated. The pines would be interspersed amongst the oaks not in separate blocks as in the modeled population. Point 4.  Patterns of forest composition in the models that are crucial to the result are unrealistic and this makes the interpretation of the results impossible.

Point 5 and conclusion. Because it can be very difficult to critically review someone else’s mechanistic model as model assumptions are often hidden in supplementary material and hard to interpret, and because relationships used in models are often arbitrarily chosen and not based on available data, it could be easy to conclude that “mechanistic models are misleading and a waste of time”. But of course that wouldn’t be productive. So my final point is that closer collaboration between modelers and data collectors would be the best way to ensure that the models are reasonable and accurate representations of the data.  In this way understanding and realistic predictions would be advanced. Unfortunately the great push to publish high profile papers works against this collaboration and manuscripts of mechanistic models rarely include data savvy referees.

D’Amico, V., J. S. Elkinton, G. Dwyer, R. B. Willis, and M. E. Montgomery. 1998. Foliage damage does not affect within-season transmission of an insect virus. Ecology 79:1104-1110.

D’Amico, V. D., J. S. Elkinton, P. J.D., J. P. Buonaccorsi, and G. Dwyer. 2005. Pathogen clumping: an explanation for non-linear transmission of an insect virus. Ecological Entomology 30:383-390.

Dwyer, G., F. Dushoff, and S. H. Yee. 2004. The combined effects of pathogens and predators on insect outbreaks. Nature 430:341-345.

Elderd, B. D., B. J. Rehill, K. J. Haynes, and G. Dwyer. 2013. Induced plant defenses, host–pathogen interactions, and forest insect outbreaks. Proceedings of the National Academy of Sciences 110:14978-14983.

Fenton, A., J. P. Fairbairn, R. Norman, and P. J. Hudson. 2002. Parasite transmission: reconciling theory and reality. Journal of Animal Ecology 71:893-905.

On Philanthropic Investment in Biodiversity Conservation

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In the holiday season there is much talk and recommendations about donations to worthy causes, and this raises an interesting conundrum in biodiversity conservation. The question is relatively simple to answer if you have little money, but any reading of the business pages of our newspapers or a walk around the shopping centers of our large cities makes you realize that there are a great many people with more than a little money. What should you do with your excess cash?

Some people (but not all) will want to ‘make a difference’ with their accumulated wealth, at least until medical science can overcome the universal belief that “you can’t take it with you”. Peter Singer (2015) has addressed this question of how to spend your money most effectively when you donate. It comes down in the first instance of your time frame. If you wish to make a difference in the short term of a few years, your choices may differ fundamentally from those taken to make a difference in the long term of 100-500 years. The bulk of philanthropic donations now are in the short-term camp. We have poor people living on the street in most of our cities, people with curable diseases in less developed countries but no medical aid, and victims of wars, earthquakes and tsunamis who must rebuild their lives. So we must start with what I think is the biggest decision regarding philanthropy – do we worry only about people, or do we worry about the biological world as well? Most donations are directly related to improving the human condition, locally or globally.

But there is hope because more and more people are realizing that we cannot separate people from biodiversity because of ecosystem services. Without well-functioning ecosystems on Earth, all the medical advances of our time are for naught. This is an important message to convey to potential donors.

Conservation philanthropy is a curious mix of short term and long term goals. Many endangered species need action now to survive. But ecologists typically look at both the shorter and the longer term goals of conservation. The simplest goal is to set aside land for protection. Without habitat all is lost. But this goal must be paired with long term funding to hire rangers to protect the area from poachers and to monitor the status of the species within the protected zone. Relying on the government to do this by itself is not adequate and never has been. But beyond this primary goal of land protection, the conservation movement fractionates. There are arguments that without effective human population stabilization biodiversity loss must continue. So does this mean that effective donations should be earmarked for agencies that empower women and offer reproductive services? But this points out that we must not fall into the trap of thinking we can do only one thing at a time. Pandas or population – why not “both and”? Climate change is a similar ‘elephant in the room’ problem.

What are the long-term goals of conservation biology that would benefit from philanthropic investment? Start with pest control. Biological control of pests is a long-term issue par excellence (Goldson et al. 2015, Myers et al. 2009, Wyckhuys et al. 2013). But biological control programs are underfunded by governments and obtain little private philanthropy. Weed control, insect pest control, vertebrate pest control all fit in the same problem basket – long term problem supported only by short term funding. Invasive pest eradication on islands is one area of pest control in which both governments and private funding have been joining forces (http://www.islandconservation.org/ ) with good results.

Two other areas of conservation biology that are classically underfunded are taxonomy and monitoring. In many taxonomic groups the majority of the species on Earth are not yet identified and described with a scientific name. The nearest analogy would be having a bank with tons of coins of different sizes and shapes, but only a few of which had any engraving on them. Taxonomy which is so vital to biology suffers because physical scientists consider it “stamp collecting” and unworthy of scientific funding. Monitoring of ecological communities faces the same problem. Monitoring ecological communities is similar to monitoring weather, yet we support meteorological stations around the world but provide little support for ecological monitoring. At present ecological monitoring is done ad hoc by dedicated people but with little systematic organization. Monitoring of changes in the arctic is being coordinated globally (http://www.amap.no/ ) and specific programs have been outlined for example for northern Canada (https://www.ec.gc.ca/faunescience-wildlifescience/, but the funding levels are low considering the size of the areas under consideration. Tropical ecosystem monitoring is even less well funded, yet that is where much of global biodiversity is located (c.f. for example, Cardoso et al. 2011, Burton 2012).

So what can you do about this? Talk up the necessity and the advantages of conservation biodiversity. Imagine what would happen to any of these biodiversity problems if a foundation the size of the Bill & Melinda Gates Foundation devoted a large amount of its donations to conservation. Environmental stewardship is the key to the Earth’s survival, and a combination of problem solving of current biodiversity problems combined with a strong research component on how species interact and ecosystems operate to sustain themselves would be a legacy for future generations and a flagship for the next 100 years.

Burton, A.C. (2012) Critical evaluation of a long-term, locally-based wildlife monitoring program in West Africa. Biodiversity and Conservation, 21, 3079-3094. doi: 10.1007/s10531-012-0355-6

Cardoso, P., Erwin, T.L., Borges, P.A.V. & New, T.R. (2011) The seven impediments in invertebrate conservation and how to overcome them. Biological Conservation, 144, 2647-2655. doi: 10.1016/j.biocon.2011.07.024

Glen, A.S., Atkinson, R., Campbell, K.J., Hagen, E., Holmes, N.D., Keitt, B.S., Parkes, J.P., Saunders, A., Sawyer, J. & Torres, H. (2013) Eradicating multiple invasive species on inhabited islands: the next big step in island restoration? Biological Invasions, 15, 2589-2603. doi: 10.1007/s10530-013-0495-y

Goldson, S.L., Bourdôt, G.W., Brockerhoff, E.G., Byrom, A.E., Clout, M.N., McGlone, M.S., Nelson, W.A., Popay, A.J., Suckling, D.M. & Templeton, M.D. (2015) New Zealand pest management: current and future challenges. Journal of the Royal Society of New Zealand, 45, 31-58. doi: 10.1080/03036758.2014.1000343

Myers, J.H., Jackson, C., Quinn, H., White, S.R. & Cory, J.S. (2009) Successful biological control of diffuse knapweed, Centaurea diffusa, in British Columbia, Canada. Biological Control, 50, 66-72. doi: 10.1016/j.biocontrol.2009.02.008

Singer, P. (2015) The Most Good You Can Do. Yale University Press, New Haven. ISBN: 978-0-300-18027-5

Wyckhuys, K.A.G., Lu, Y., Morales, H., Vazquez, L.L., Legaspi, J.C., Eliopoulos, P.A. & Hernandez, L.M. (2013) Current status and potential of conservation biological control for agriculture in the developing world. Biological Control, 65, 152-167. doi: 10.1016/j.biocontrol.2012.11.010 http://www.islandconservation.org/where-we-work/

 

On Funding for Agricultural Research

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One of the most important problems of our day is the interaction between human population growth and the maintenance of sustainable agriculture in the face of climate change. I am currently sitting at the International Rice Research Institute (IRRI) near Manila where I am told they are responding to a 15-20% reduction in funding for their work. I have found this funding situation to be so ridiculous that I have decided to write this blog. Please stop reading if you think agricultural research already has too much funding, or that climate change and sustainable agriculture are not very important issues in comparison to our need for economic growth and increased wealth.

The critical issues here in Southeast Asia are the increasing human population and the productivity of rice agriculture. IRRI has done and is doing outstanding research to raise production of rice with new varieties and to control pests of rice with clever techniques that minimize the spreading of poisons, which everyone agrees must be minimized to protect agricultural and natural ecosystems. Present research concentrates on the ‘yield gap’, the difference between the actual production from farmer’s fields and the maximum possible yield that can be achieved with the best farm practices. The yield gap can be closed with more research by both social and natural scientists, but that is what is under stress now. IRRI operates with funding from a variety of governments and from private donors. Research funds are now being reduced from many of these sources, and the usual explanation is the faltering global economy combined with the severe refugee problems in the Middle East.

Consequently we now do not have enough money to support the most important research on a crop – rice – that is the essential food of half of the Earth’s human population. And it is not just research on rice that is being reduced, but that on corn, wheat, and any other crop you wish to name. Governments of developed countries like Canada, Australia and the USA are reducing their funding of agricultural research. Anyone who likes to eat might think this is the most ridiculous decision of all because agricultural research is an essential part of poverty reduction in the world and overall human welfare. So I ask a simple question – Why? How is it that you can visit any city in a developed country and see obscene excesses of wealth defined in any way you wish? Yet our governments continue to tell us that we are taxed too much, and we cannot afford more foreign aid, and that if we raised the taxation rate to help the poor of the Earth, our countries would all collapse economically. Yet historically taxes have often been raised during World Wars with general agreement that we needed to do so to achieve society’s goals. The goal now must be poverty reduction and sustainability in agriculture as well as in population. Important efforts are being done on these fronts by many people, but we can and must do more if we wish to leave a suitable Earth for future generations.

At the same time this shortage of funding should not all be laid at the feet of governments. Private wealth continues to increase in the world, and private gifts to research agencies like IRRI and to universities are substantial. But if we believe Piketty (2014), the rich will only get richer in the present economic climate and perhaps the message needs to be sent that donations are long overdue from the wealthy to establish foundations devoted to the problems of sustainability in agriculture, population, and society, as well as the protection of biodiversity. The inactions of people and governments in the past are well documented in books like Diamond (2005). Many scientific papers are mapping and have mapped the way forward to achieve a sustainable society (e.g. Cunningham et al. 2013). To make effective progress we must begin reinvestment in agriculture while not neglecting the human tragedies of our time. It can be both-and rather than either-or.

Cunningham, S.A., et al. (2013) To close the yield-gap while saving biodiversity will require multiple locally relevant strategies. Agriculture, Ecosystems & Environment, 173, 20-27. doi 10.1016/j.agee.2013.04.007

Diamond, J. (2005) Collapse: How Societies Choose to Fail or Succeed. Viking, New York. 575 pp. ISBN: 0670033375

Piketty, T. (2014) Capital in the Twenty-First Century. Belknap Press, Harvard University, Boston. 696 pp. ISBN 9780674430006

On Sequencing the Entire Biosphere

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There is an eternal war going on in science which rests on the simple question of “What should we fund?” If you are at a cocktail party and want to set up a storm of argument you should ask this question. There may be general agreement among many scientists that we should reduce funding on guns and wars and increase funding on alleviating poverty. But then the going gets tough. It is easier to restrict our discussion to science. There is a clear hierarchy in science funding favouring the physical sciences that can make money and the medical sciences that keep us alive until 150 years of age. But now let’s go down to biology.

The major rift in biology is between funding blue sky research and practical research. In the discussions about funding, protagonists often confound these two categories by saying that blue sky research will lead us to practical research and nirvana. We can accept salesmanship to a degree. The current bandwagon in Canada is to barcode all of life on earth, at a cost of perhaps $2 billion but probably much more. Or we can sequence everything we can get our hands on with the implicit promise that it will help us understand these organisms better or solve practical problems in conservation and management. But all of this is driven by what we can do technically, so it is machine driven, not necessarily thought driven. So if you want another heated discussion among ecologists, ask them how they would spend $2 billion for research in ecology.

We sequence because we can. Fifty years ago I heard a lecture by Richard Lewontin in which he asked what we would know if we had a telephone book with all the genetic sequences of all the organisms on earth. He concluded, as I remember, that we would know nothing unless we had a purely ‘genetic-determinism’ view of life. There is more to life than amino acid sequences perhaps.

No one I know thinks that current ecological changes are driven by genetics, but perhaps I do not know the right people. So for example, if we sequence the genomes of all the top predators on earth (Estes et al. 2011, Ripple et al. 2014), would we know anything about their importance in community and ecosystem dynamics? Probably not. But still we are told that if in New Zealand we sequence the common wasp genome we will find new ways to control this insect pest. Perhaps an equally important area would be funding to understand their biology in New Zealand, and the threats and threatening processes in an ecosystem context.

We are back to the starting question about the allocation of resources within biology. Perhaps we cycle endlessly in science funding in search of the Promised Land. In a recent paper Richards (2015) makes the argument that genome sequencing is the key to biology and thus the Promised Land:

“The unifying theme of biology is evolutionary conservation of the gene set and the resultant proteins that make up the biochemical and structural networks of cells and organisms throughout the tree of life.”

“The absence of these genome references is not just slowing research into specific questions; it is precluding a complete description of the molecular underpinnings of biology necessary for a true understanding of life on our planet.” (p. 414)

There seems little room in all this for ecological thought or ecological viewpoints. It is implicit to me that these arguments for genome sequencing have as a background assumption that ecological research is rather useless for achieving biological understanding or for solving any of the problems we currently face in conservation or management. Richards (2015) makes the point himself in saying:

“While the author is fond of ‘stamp collecting’, there are many good reasons to expand the reference sequences that underlie biological research (Table 2).”

The table he refers to in his paper has not a single item on ecological research, except that this approach will achieve “Acceleration of total biological research output”. It remains to be seen whether this view will achieve much more than stamp collecting and a massive confusion of correlation with causation. It requires a great leap of faith that this approach through genome sequencing can help to solve practical ecological problems.

Richards, S. (2015) It’s more than stamp collecting: how genome sequencing can unify biological research. Trends in Genetics, 31, 411-421.

Estes, J.A., et al. (2011) Trophic downgrading of Planet Earth. Science, 333, 301-306.

Ripple, W.J., et al. (2014) Status and ecological effects of the world’s largest carnivores. Science, 343, 1241484.